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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs6012564 1 rs6063354 chr20:47719949 ARFGEF2 chr20:47538275-47653229:+ -0.13 -4.12 4.47E-5 Anger
THCA cis rs6012564 1 rs6063354 chr20:47719949 CSE1L chr20:47662838-47713484:+ 0.41 10.23 2.31E-22 Anger
THCA cis rs6012564 1 rs6063360 chr20:47748375 ARFGEF2 chr20:47538275-47653229:+ -0.12 -3.92 0.0001 Anger
THCA cis rs6012564 1 rs6063360 chr20:47748375 CSE1L chr20:47662838-47713484:+ 0.41 10.23 2.43E-22 Anger
THCA cis rs6012564 1 rs6063361 chr20:47757963 ARFGEF2 chr20:47538275-47653229:+ -0.12 -3.83 0.000145 Anger
THCA cis rs6012564 1 rs6063361 chr20:47757963 CSE1L chr20:47662838-47713484:+ 0.41 10.13 5.59E-22 Anger
THCA cis rs6063399 1 rs6063399 chr20:48019818 KCNB1 chr20:47988505-48100490:- -0.17 -3.6 0.000357 Obesity-related traits
THCA cis rs428445 1 rs6064401 chr20:55057904 C20orf43 chr20:55043647-55093942:+ 0.28 7.59 1.69E-13 Refractive astigmatism
THCA cis rs428445 1 rs6064404 chr20:55070798 C20orf43 chr20:55043647-55093942:+ 0.24 6.56 1.38E-10 Refractive astigmatism
THCA cis rs428445 1 rs6064405 chr20:55070946 C20orf43 chr20:55043647-55093942:+ 0.28 7.58 1.87E-13 Refractive astigmatism
THCA cis rs428445 1 rs6064405 chr20:55070946 CSTF1 chr20:54967427-54979582:+ 0.17 3.52 0.000481 Refractive astigmatism
THCA cis rs2241437 1 rs60649958 chr2:86283000 LOC90784 chr2:86247339-86250991:- -0.36 -3.49 0.000531 Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)
THCA cis rs2241437 1 rs60649958 chr2:86283000 POLR1A chr2:86253453-86333278:- -0.3 -4.05 5.93E-5 Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)
THCA cis rs7594645 1 rs60652129 chr2:207649313 MDH1B chr2:207598943-207630050:- 0.47 6.03 3.19E-9 Episodic memory
THCA cis rs425105 1 rs60652743 chr19:47205707 FKRP chr19:47249303-47261832:+ 0.54 6.93 1.39E-11 Type 1 diabetes